Missions not marking as complete
 

I am running the mission to patrol planets in the orion sector. I have completed half the missions, I get a "well done, complete" at the end of the individual missions but none of them are marked as complete and I can rerun them again without having them mark complete.

is your inventory full? i had that happen to me today

I'm having this issue too. I saw someone in sector chat saying they were having the same issue yesterday. I actually had one system mark complete, only to disappear later.