I just got mine too :-)

- I swapped the standard torpedoes out for some better ones I had
- Put the Aegis set on (looks great except for the Engines)
- Kitted out the rest with loads of consoles from other ships (since you can do that now)

BOFF-wise I chose my standard Cruiser setup...

LT UNIVERSAL

- Sci Team 1
- Hazard Emitters 2


LT CMDR TACT

- Torp High Yield 1
- Target Shield Subsystems 2
- Beam Array Overload 3

CMDR ENG

- EPW 1
- Boarding Party 1
- Eng Team 3
- Eject Warp Plasma 3

LT ENG

- EPS 1
- Reverse Shield Polarity 1

ENSIGN SCI

- Polarize Hull 1