Anyone who's been pvping knows what the scramble animation looks like. If you see the green blobs of doom heading towards your ship, angle your camera away from anyone else, zoom in as tight to your ship as you can (Suggest binding that to your mouse wheel if you haven't already) and hit science team. This reliably clears it 99% of the time for me.
Don't get me wrong, I'm not advocating the change, I HATE scramble, but adapt. Everyone else will.
I think I've now read and re-read the upcoming 'changes' to Scramble (and torps, what in the galaxy?!)... Maybe PW wants to get rid of all the 'old' PvP Community, so they can start fresh after the F2P launch?... *sigh*