I had a problem after the last patch where when I clicked on the launcher it would show up on my tool bar but the window wouldn't show up. So i ran the game as administrator and forced a verify. This did not solve my issue. So i decided to run the game as admin and just get by on that. But once in the game my cursor couldn't click on any in game buttons, so i couldn't check the settings menu in game. So i went to Cryptic Studios\Star Trek Online\Live\Localdata and opened Gameprefs.Pref with note pad and found the setting PrefEntry GfxSettings.SoftwareCursor 0 and changed it to 1. This seems to have fixed the issue. I'll include any other issues related to this if/when they occur.