I do wish a little more for some puzzle type quests. For some reason I remember seeing, and this was quite awhile ago but it was referring to STO, (maybe before Cryptic picked it up) where there was a diagram of a warp core and you had to click certain LCAR buttons to I believe vent the plasma and redistribute power. I would enjoy things like that, especially of they are timed.
Beam over to a ship that is going to explode. Run around for a bit to turn off certain stations, then do this type of puzzle and save the day all within a few minutes, and not worry about killing any Orion pirates on board!
Hopefully they can add stuff like this in the future.