STO doesn't have an intransitive balance model anyways. There isn't even any kind of counter to most of the abilities. Only the really drastic ones like Viral Matrix have a counter at all. Try to counter something like feedback pulse or reverse shield polarity. Not going to happen...
Everything that runs off a power system has a disable. If you're fully boosting that skill and stacking EPS, it gets a bit harder to take down, but it's just as doable with some teamwork. My group removes RSP fairly regularly. It isn't an impossible task or a theoretical presumption.
There are also the skills to get around them some if you don't like hitting the systems:
VM has Omega and Sci Team.
RSP has Energy Mod and non Beams.