I haven't seen this posted anywhere yet, so I thought I would share it for anyone that is interested.
I created a quick little Excel sheet that lists BO abilities by what skills affect them. I have it broken down both by skills and abilities (ie, what skills each ability uses and what abilities go into each skill). I did not list all versions of skills (only listed Cannon: Rapid Fire - not I, II, III since they are all based off the same skills). This information was gathered from my personal experience and from the character builder at http://sto-builder.binarybit.ch/. I will work on adding PC skills into it as well for the different classes. If anyone has any updates, please either post them here or message me with them and I will continue to update the document and repost it. It is an Excel document in .xls format zipped up due to forum restrictions.