While they are bred to follow the founders, some refused an order to kill when the kill lacked honour, some did rebel and the founders used White in order to stop this, that was the whole reason for the white.
Those were grown Jem Hadar, these are eggs. Big difference.
First off, we aren't told if the eggs are even fertilized. Meaning they are practically just organic goo at that point. Next, it was established in DS9 that they are genetically bred to follow the Founders so your idea wouldn't work I think.
I disagree that the Federation isn't about killing the eggs in this scenario. I could see Sisko, Kirk and even Picard or Janeway doing it. They would have no problem destroying a vorta cloning center so why not the eggs.
sisko would have made a nice omelet out of those eggs, yum yum. might have even chucked in some peppers
people morality is very subjective though.
bombing cloning facilities from orbit is ok.
destroying shipyards full of workers is ok
but when people start to see things up close it gets a bit trickier. what ever our personal feeling are i do agree an option would be nice
besides im sure that mission has been taken out. i never saw it when i played to RA5