I filed a bug report on this and got the same canned response.
I also noticed that at least one of the phaser arrays on that hull is not working properly.
The beam is emerging from outside of the ship... WELL outside the ship. Roughly up and to the corner of the screen from the rear phaser beam array. As for the Torpedoes, it seems to be a problem with the Cerebus top hull section specifically. I tried the new C-Store version and the same problem occurs because I have that section on it.