Ever since I received a larger ship with more than 4 weapon slots, my weapons tray overlaps over my bridge officers, I'm set to a 1920x1080 resolution on a 22 inch monitor, so the overlap is not for a lack of space. Has anyone else had this issue, and do you know how to fix it? I've been messing around in all the settings but with no luck.
When you're in your ship hit the [ESC] key. You'll get several options, one of which is labeled 'Rearrange HUD'.
This changes the UI to a bunch of green boxes. Those green boxes show where the UI windows will be. Drag them around so that they no longer overlap then hit [ESC] again to go back to the normal UI. Repeat as necessary until the UI is set up the way you want it to be.