I'm having issues with my KDF character losing her inventory and either her equipped personal items or her ship items. I've tried multiple transfers with her and none of them have worked. My Fed character transferred just fine with everything intact.
So there is a fix to the inventory problem, at least for me: that vendor at DS9, outside the old Omega Force EDC goodies shop now sells the Maco/Omega Force/Adapted MACO stuff for free, but with one headache gone a new one arises:
All my doffs, except for the ones currently on missions, are GONE.
Since my ship uses an Aux To Batt build, the active space duty Technicians all missing as well the other 170+ crew members missing means that I'm basically a sitting duck of a build, with no cooldown reduction. I hit EPtS and AtB in combat and then had a slight heart attack when I noticed none of the cooldowns were happening. Needless to say I limped out of there with a Borg Cube at my tail, trying to figure out what went wrong.