Also having the problem of the skirt option not there for my female Boffs. Made sure I claimed 22nd century uniform as well as mirror universe. Still no option available. Tried to upload a screen shot but it would not attach.
I have the same problem, I can't use the skirt option anymore on all my femeale chars, and I don't know if it's becuase of the patch or because if it's when I baught the Emterprise package. I baught this package at the same time of the patch.