I was flying around earlier and saw someone that looked like they had Borg stuff on their ship. I didn't see anything in the shipyard or C-Store with those options. Is that a special unlockable? If so, where can you get it?
(Sorry about all the questions, I'm really getting into this game )
Yup, they are items you can't buy. You have to work your way up to the missions that give them. And they are some sweet sweet add on's. I have the visuals disabled on my ship and almost always get asked a few times how my intrepid class is doing warp 14.
the Borg Console is from the regular,( i.e. 1 person type) mission "Assimilated" dealing with the Borg and the Undine. The universal console puts Borg 'zits' on your ships hull that glow green.
As was mentioned, however, those visuals can easily be disabled by right-clicking on the item on the ship paperdoll and selecting "Disable Visuals" (just like with armor and kits, and also works on the Aegis pieces IIRC).