Cant complete the missions. Got into the "Den of Thieves" ground portion and took up the Fed Mirrior Fleet Action and then came back to it, finished the ground portion and the space after and didn't get credit.
Also the "Pico System Distress Call" missions, did it and it also didn't complete.
I never even received the "Pico Distress Call" mission, even after doing the Pico patrol as planned. Also, I couldn't turn in some patrols in the Cardassian series. Two systems in the Kalandra sector of Beta Ursae, for example.
The Romulan Commander is a clone. I believe it has somethign to do with that issue.
If you run around the map, you notice the same scene with the Romulan Commander and the "Traitor" happenes a bit further up the hill as well.... At the same time.