Its kind of a pain. I just made a Klingon vs. Gorn mission. Gorn, Orion, Nausicaan etc are all set to be friendlies on the KDF side. So I had to reskin a ton of Romulans by hand.
On the plus side, copying and pasting NPC groups works for me now. Still have to rename them all though.
The Foundry Roundtable live Wednesdays at 7:30PM EST/4:30PM PST on twitch.tv/thefoundryroundtable "I would rather take a chance on getting a change made to the game through positive engagement than know for sure that I got a change made by complaining" -drogyn1701, May 14, 2014.