Adjournon, I understand what you are saying but I think you are overlooking a few important points.
First, as you noted you are comparing an entire ship with an individual piece of equipment. When you pay Z1500 for the Sao Paolo you are buying...
-A ship with premium performance for your Tactical captain and presumedly any future tactical captains you roll
-Additional costume parts for the Tactical Escort, the Tactical Escort Retrofit, and the Fleet TER
-Quad phaser cannons for any of your captains who want them (with a unique shooting animation)
By contrast, the 10,000 dilithium and fleet equipment provision you are spending for the AFDHC are being spent for a single weapons module.
If you don't want the costume parts, don't want the performance boost for your 30-40 level tactical toons, and don't want the account-wide access for the weapon, then the AFDHC is definitely the better choice.
There's another important point: by paying a premium, anyone can have the QPC immediately for any character that is high enough level to spawn the Sao Paolo (i.e. over 30th level and on the Fed faction). The AFDHC, by contrast, is limited to Vice Admirals and critically requires you to be:
A) a member of a fleet, and
B) have access to gear provisions and a tier 2 fabber that you presumably participated in earning.
In other words, the discounted cost of the AFDHC is also related to the fact that the devs are incentivizing certain behaviors (fleet membership).
Finally, there's the matter of infinity gear. The AFDHC is Mk XII gear and there is not reasonable expectation that it will ever improve in stats unless there is a radical change in the way the weapons are balanced across the board. By contrast, the QPC is infinity gear, which means that if/when (probably when based on dev comments) Admiral rank and Tier 6 comes out, the QPC is likely to advance to Mk XIV just as it (belatedly) advanced to Mk XII in Season 6.
Summary
You are correct that, compared side-to-side with the QPC and assuming the QPC is the sole purpose of buying the Sao Paolo, the AFDHC is a better value.
However, the Z1500 price of the QPC includes a number of other items. Some players will want these things and this will change their value judgment about the QPC; in fact, market research related to FTP in Korea revealed that cosmetic items were the main driver of FTP microtransactions.
TL;DR
You're comparing apples and oranges
