Haven't had a graphic issue like this before, but when I tried to play Into The Hive (the ground part), I was able to see my HUD, but everything else was solid 'lime green'. I don't have this issue anywhere else in the game.
I have the same problem. But I know the reason for my problem is a very old Laptop with a very old graphic card. I had some problems before, perhaps you had or have them too. One is, that after the first starbase special project upgrade with new lights the whole Ops is very dark. My graphic card can't show the new lights. Or when I try to use flashlights, the room don't lighten up at all. Also something my Graphics can't show. Another problem like this was in a patrol mission in the Psi Velorum Block. It was a small one where you have to get a Hologram for a Ferengi. There the room was some kind of orange instead of green but is was exactly the same problem.