Having the same problem on my Fleet K'tinga T5-U. Also noticed the icon of the ship in the Change Ship/Ship Selection window is a white block. Switching to another ship will bring the buttons back to normal, but returning to the K'tinga will set them back in their skewed position.
"I am your leader, I am in command. The fate of all my followers lies in my hands. The burden of what is right or wrong, decisions have to be made. I have to take you all into this burning Gate." - Iron Savior, 'Never Say Die'.